PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g02330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 560aa    MW: 61008.5 Da    PI: 6.0027
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g02330genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.3e-30316374259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+H h+
  Tp2g02330 316 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRSILITTYEGNHIHP 374
                7***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-33300376IPR003657WRKY domain
SuperFamilySSF1182903.14E-27308376IPR003657WRKY domain
PROSITE profilePS5081128.874310376IPR003657WRKY domain
SMARTSM007743.6E-36315375IPR003657WRKY domain
PfamPF031063.1E-26317374IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MDIGWSGLTL DSSSLDLINP NRFKNNNHCR FSNPLTMSRI GNDDDDQKTK ISTAGSEFRF  60
PVNLSGIRDR EDDDFSSGVA GENDREVLGE VDFFSVKKSR VCRDDVDDAD FLVKKEEQDD  120
RTDVNTGLNL RTMVNTGSDQ SVIDDGESSE MEDKRAKNEL VKLQDELKKT TMENQKLREL  180
LTQVTNNYSS LQIHLVSLMQ QQHNKAIEAA GKPEETIVPR QFIDLGPSRA AGEAEDVSNS  240
SSEDRTRSGG SSAAEKRNNE VRDGKRRGRE ESPENESNKV QKVNNSSSTT YDQSAEATMR  300
KARVSVRARS EAPMISDGCQ WRKYGQKMAK GNPCPRAYYR CTMATGCPVR KQVQRCAEDR  360
SILITTYEGN HIHPLPPAAV AMASTTTAAA NMLLSGSMSS HDGMMNPTNL LARAVLPCST  420
SMATISASAP FPTVTLDLTH SPPPPNGSNS APSTAAATNN NNHNSLMQRP QQQQQQQMTN  480
LPPGMLPHVI GQALYNQSKF SGLQFSGGSP SAAFSQPQTV ADTITALTAD PNFTAALAAV  540
ISSMINGSNH HDGEGNNKNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22302378176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606301.10.0PREDICTED: WRKY transcription factor 6
SwissprotQ9C5190.0WRKY6_ARATH; WRKY transcription factor 6
TrEMBLA0A078FYX90.0A0A078FYX9_BRANA; BnaC09g13680D protein
TrEMBLA0A0D3E4X00.0A0A0D3E4X0_BRAOL; Uncharacterized protein
TrEMBLC4N0X40.0C4N0X4_BRANA; WRKY6-1 transcription factor
STRINGBra027057.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.10.0WRKY family protein